Cuffmerge SyntaxError invalid syntax

by: Vahidjj2005, 7 years ago


Hi
When I ran Cuffmerge command, I recieved below error. I would be appreciated if you help me, and explain what should I do?

Cuffmerge command: cuffmerge -o '/root/Medicago/cuffmerge' --ref-gtf '/root/Medicago/genome/GTF/index.gtf' --min-isoform-fraction 0.1 '/root/Medicago/transcripts/exam1.txt'

The error ; File "/root/cufflinks-2.2.1.Linux_x86_64/cuffmerge", line 95
except getopt.error, msg:
^ SyntaxError: invalid syntax

Thank you so much!



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